PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02596.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 272aa    MW: 30952.1 Da    PI: 10.067
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02596.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.33.9e-33391791128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                              lp+G++F+P+d+e++ e+L++kv+ + ++++        +++   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r++
  Sme2.5_02596.1_g00001.1  39 LPAGVKFDPSDQEIL-EHLEAKVRLDAHKIHPlidefikTLEGEnGICYTHPEKLP-GVTKDGLVRHFFHRPSKAYTTGTRKRRKV 122
                              799***********9.99*****99985543322332222333336**********.555566788******************74 PP

                      NAM  79 k......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              +      + +W++tgk+++v+  k++++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Sme2.5_02596.1_g00001.1 123 HtdiqgnETRWHKTGKTRPVVF-KNKVKGHKKILVLYtnYGKQRKPEKTNWVMHQYHL 179
                              4445455888************.8899**********6657999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3734198IPR003441NAC domain
PROSITE profilePS5100532.30839198IPR003441NAC domain
PfamPF023655.6E-1540179IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MTSNYENSIS VTKTIRTCPS CGHLIKSEEK AGIHNLPGLP AGVKFDPSDQ EILEHLEAKV  60
RLDAHKIHPL IDEFIKTLEG ENGICYTHPE KLPGVTKDGL VRHFFHRPSK AYTTGTRKRR  120
KVHTDIQGNE TRWHKTGKTR PVVFKNKVKG HKKILVLYTN YGKQRKPEKT NWVMHQYHLG  180
DNEDEKEGEL VVSKVFYQTQ PRQCGSNNNN NNNIRPPLPQ VRTSIAQVGS QFVQCFNPTT  240
LISFGQFDRP TTTTTTTRLP NFNNLPDGSF IP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-176HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243384.11e-174PREDICTED: NAC domain-containing protein 8
SwissprotO494591e-117NAC73_ARATH; NAC domain-containing protein 73
TrEMBLK4CFQ41e-174K4CFQ4_SOLLC; Uncharacterized protein
STRINGSolyc07g053590.2.11e-174(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-117NAC domain containing protein 73